Publication

2023
2022
2021
2020
2019
Before

2023

· Liu S, Liang Y, Li J, Yang S, Liu M, Liu C, Yang D, Zuo Y. Integrating reduced amino acid composition into PSSM for improving copper ion-binding protein prediction. Int J Biol Macromol. 2023 Jul 31;244:124993. doi: 10.1016/j.ijbiomac.2023.124993. Epub 2023 Jun 10. PMID: 37307968. (2023 IF: 8.2)

· Zhao X, Yi L, Zuo Y, Gao F, Cheng Y, Zhang H, Zuo Y, Jia X, Su S, Zhang D, Zhang X, Ren Y, Mu Y, Jin X, Li Q, Bateer S, Lu Z. High-Quality Genome Assembly and Genome-Wide Association Study of Male Sterility Provide Resources for Flax Improvement. Plants (Basel). 2023 Jul 26;12(15):2773. doi: 10.3390/plants12152773. PMID: 37570928; PMCID: PMC10421198.(2023 IF: 4.5)

· Su D, Zhang H, Xiong Y, Wei H, Yu Y, Li H, Wang T, Zuo Y, Yang L. Stratification of ovarian cancer patients from the prospect of drug target-related transcription factor protein activity: the prognostic and genomic landscape analyses. Brief Funct Genomics. 2023 Jul 17;22(4):351-365. doi: 10.1093/bfgp/elad008. PMID: 37103222. (2023 IF: 4.0)

· Lin H, Zuo Y, Azhagiya Singam ER. Editorial: Computational analysis of promoters in prokaryotic genomes. Front Microbiol. 2023 Jul 10;14:1242139. doi: 10.3389/fmicb.2023.1242139. PMID: 37492255; PMCID: PMC10364605. (2023 IF: 5.2)

· Su D, Xiong Y, Wei H, Wang S, Ke J, Liang P, Zhang H, Yu Y, Zuo Y, Yang L. Integrated analysis of ovarian cancer patients from prospective transcription factor activity reveals subtypes of prognostic significance. Heliyon. 2023 May 11;9(5):e16147. doi: 10.1016/j.heliyon.2023.e16147. PMID: 37215759; PMCID: PMC10199194. (2023 IF: 4.0)

· Li J, He X, Gao S, Liang Y, Qi Z, Xi Q, Zuo Y*, Xing Y. The Metal-binding Protein Atlas (MbPA): An Integrated Database for Curating Metalloproteins in All Aspects. J Mol Biol. 2023 Apr 21:168117. doi: 10.1016/j.jmb.2023.168117. Epub ahead of print. PMID: 37086947. (2023 IF: 6.151)

· Liu M, Zhou J, Xi Q, Liang Y, Li H, Liang P, Guo Y, Liu M, Temuqile T, Yang L, Zuo Y*. A computational framework of routine test data for the cost-effective chronic disease prediction. Brief Bioinform. 2023 Mar 19;24(2):bbad054. doi: 10.1093/bib/bbad054. PMID: 36772998. (2023 IF: 13.994)

· Li H, Long C, Hong Y, Luo L, Zuo Y*. Characterizing Cellular Differentiation Potency and Waddington Landscape via Energy Indicator. Research (Wash D C). 2023 Apr 11;6:0118. doi: 10.34133/research.0118. PMID: 37223479; PMCID: PMC10202187. (2023 IF: 11.036)

· Wang H, Zhang Z, Li H, Li J, Li H, Liu M, Liang P, Xi Q, Xing Y, Yang L, Zuo Y*. A cost-effective machine learning-based method for preeclampsia risk assessment and driver genes discovery. Cell Bioscience. 2023 Feb 28;13(1):41. doi: 10.1186/s13578-023-00991-y. PMID: 36849879; PMCID: PMC9972636. (2023 IF: 9.584)

· Zheng L, Liang P, Long C, Li H, Li H, Liang Y, He X, Xi Q, Xing Y, Zuo Y*. EmAtlas: a comprehensive atlas for exploring spatiotemporal activation in mammalian embryogenesis. Nucleic Acids Res. 2023 Jan 6;51(D1):D924-D932. doi: 10.1093/nar/gkac848. PMID: 36189903; PMCID: PMC9825456. (2023 IF: 19.160)

2022

· Chao L, Yang S, Li H, Long C, Xi Q, Zuo Y*. Competitive binding of TET1 and DNMT3A/B cooperates the DNA methylation pattern in human embryonic stem cells. Biochim Biophys Acta Gene Regul Mech. 2022 Oct;1865(7):194861. doi: 10.1016/j.bbagrm.2022.194861. Epub 2022 Aug 20. PMID: 35998875. (2022 IF:6.304)

· Liang P, Wang H, Liang Y, Zhou J, Li H, Zuo Y*. Feature-scML: an open-source Python package for the feature importance visualization of single-cell omics with machine learning. Current Bioinformatics. (2021 IF: 4.850)

· Zheng L, Liu D, Li YA, Yang S, Liang Y, Xing Y, Zuo Y*. RaacFold: a webserver for 3D visualization and analysis of protein structure by using reduced amino acid alphabets. Nucleic Acids Res. 2022 Jul 5;50(W1):W633-W638. doi: 10.1093/nar/gkac415. PMID: 35639512; PMCID: PMC9252778. (2022 IF: 19.160)

· Liang Y, Yang S, Zheng L, Wang H, Zhou J, Huang S, Yang L, Zuo Y*. Research progress of reduced amino acid alphabets in protein analysis and prediction. Comput Struct Biotechnol J. 2022 Jul 4;20:3503-3510. doi: 10.1016/j.csbj.2022.07.001. PMID: 35860409; PMCID: PMC9284397. (2022 IF: 6.155)

· Li H, Long C, Hong Y, Chao L, Peng Y, Zuo Y*. The Cumulative Formation of R-loop Interacts with Histone Modifications to Shape Cell Reprogramming. Int J Mol Sci. 2022 Jan 29;23(3):1567. doi: 10.3390/ijms23031567. PMID: 35163490; PMCID: PMC8835745. (2022 IF: 6.208)

· Sun Y, Li H, Zheng L, Li J, Hong Y, Liang P, Kwok LY, Zuo Y*, Zhang W, Zhang H. iProbiotics: a machine learning platform for rapid identification of probiotic properties from whole-genome primary sequences. Brief Bioinform. 2022 Jan 17;23(1):bbab477. doi: 10.1093/bib/bbab477. PMID: 34849572. (2022 IF: 13.994)

2021

· Liang P, Zheng L, Long C, Yang W, Yang L, Zuo Y*. HelPredictor models single-cell transcriptome to predict human embryo lineage allocation. Brief Bioinform. 2021 Nov 5;22(6):bbab196. doi: 10.1093/bib/bbab196. PMID: 34037706. (2021 IF: 13.994)

· Wang H, Liang P, Zheng L, Long C, Li H, Zuo Y*. eHSCPr discriminating the cell identity involved in endothelial to hematopoietic transition. Bioinformatics. 2021 Aug 9;37(15):2157-2164. doi: 10.1093/bioinformatics/btab071. PMID: 33532815. (2020 IF: 6.937)

· Long C, Li H, Li X, Yang W, Zuo Y*. Nuclear Transfer Arrest Embryos Show Massive Dysregulation of Genes Involved in Transcription Pathways. Int J Mol Sci. 2021 Jul 30;22(15):8187. doi: 10.3390/ijms22158187. PMID: 34360962; PMCID: PMC8347363. (2020 IF: 6.208)

· Zhou J, Bo S, Wang H, Zheng L, Liang P, Zuo Y*. Identification of Disease-Related 2-Oxoglutarate/Fe (II)-Dependent Oxygenase Based on Reduced Amino Acid Cluster Strategy. Front Cell Dev Biol. 2021 Jul 16;9:707938. doi: 10.3389/fcell.2021.707938. PMID: 34336861; PMCID: PMC8323781. (2020 IF: 6.081)

· Li H, Long C, Xiang J, Liang P, Li X, Zuo Y*. Dppa2/4 as a trigger of signaling pathways to promote zygote genome activation by binding to CG-rich region. Brief Bioinform. 2021 Jul 20;22(4):bbaa342. doi: 10.1093/bib/bbaa342. PMID: 33316032. (2021 IF: 13.994)

· Zheng L, Liu D, Yang W, Yang L, Zuo Y*. RaacLogo: a new sequence logo generator by using reduced amino acid clusters. Brief Bioinform. 2021 May 20;22(3):bbaa096. doi: 10.1093/bib/bbaa096. PMID: 32524143. (2020 IF: 11.622) ESI 1%高被引论文

· Dong GF, Zheng L, Huang SH, Gao J, Zuo YC. Amino Acid Reduction Can Help to Improve the Identification of Antimicrobial Peptides and Their Functional Activities. Front Genet. 2021 Apr 20;12:669328. doi: 10.3389/fgene.2021.669328. PMID: 33959153; PMCID: PMC8093877. (2021 IF: 4.772)

· Wang Z, Liu D, Xu B, Tian R, Zuo Y*. Modular arrangements of sequence motifs determine the functional diversity of KDM proteins. Brief Bioinform. 2021 May 20;22(3):bbaa215. doi: 10.1093/bib/bbaa215. PMID: 32987405. (2020 IF: 11.622)

· Xi Q, Wang H, Yi L, Zhou J, Liang Y, Zhao X, Zuo Y*. ANPrAod: Identify Antioxidant Proteins by Fusing Amino Acid Clustering Strategy and N-Peptide Combination. Comput Math Methods Med. 2021 Apr 8;2021:5518209. doi: 10.1155/2021/5518209. PMID: 33927782; PMCID: PMC8049822.

· Wang H, Xi Q, Liang P, Zheng L, Hong Y, Zuo Y*. IHEC_RAAC: a online platform for identifying human enzyme classes via reduced amino acid cluster strategy. Amino Acids. 2021 Feb;53(2):239-251. doi: 10.1007/s00726-021-02941-9. Epub 2021 Jan 23. PMID: 33486591. (2020 IF: 3.789)

· Xu B, Liu D, Wang Z, Tian R, Zuo Y*. Multi-substrate selectivity based on key loops and non-homologous domains: new insight into ALKBH family. Cell Mol Life Sci. 2021 Jan;78(1):129-141. doi: 10.1007/s00018-020-03594-9. Epub 2020 Jul 8. PMID: 32642789. (2020 IF: 9.261)

2020

· Sun Z, Huang S, Zheng L, Liang P, Yang W, Zuo Y*. ICTC-RAAC: An improved web predictor for identifying the types of ion channel-targeted conotoxins by using reduced amino acid cluster descriptors. Comput Biol Chem. 2020 Dec;89:107371. doi: 10.1016/j.compbiolchem.2020.107371. Epub 2020 Sep 7. PMID: 32950852. (2020 IF: 3.737)

· Cao P, Li H, Zuo Y*, Nashun B. Characterization of DNA Methylation Patterns and Mining of Epigenetic Markers During Genomic Reprogramming in SCNT Embryos. Front Cell Dev Biol. 2020 Sep 2;8:570107. doi: 10.3389/fcell.2020.570107. PMID: 32984351; PMCID: PMC7492385. (2020 IF: 6.081)

· Liang P, Yang W, Chen X, Long C, Zheng L, Li H, Zuo Y*. Machine Learning of Single-Cell Transcriptome Highly Identifies mRNA Signature by Comparing F-Score Selection with DGE Analysis. Mol Ther Nucleic Acids. 2020 Jun 5;20:155-163. doi: 10.1016/j.omtn.2020.02.004. Epub 2020 Feb 13. PMID: 32169803; PMCID: PMC7066034. (2019 IF: 7.032)

· Li H, Song M, Yang W, Cao P, Zheng L, Zuo Y*. A Comparative Analysis of Single-Cell Transcriptome Identifies Reprogramming Driver Factors for Efficiency Improvement. Mol Ther Nucleic Acids. 2020 Mar 6;19:1053-1064. doi: 10.1016/j.omtn.2019.12.035. Epub 2020 Jan 14. PMID: 32045876; PMCID: PMC7015826. (2019 IF: 7.032)

2019

· Li H, Ta N, Long C, Zhang Q, Li S, Liu S, Yang L, Zuo Y*. The spatial binding model of the pioneer factor Oct4 with its target genes during cell reprogramming. Comput Struct Biotechnol J. 2019 Sep 11;17:1226-1233. doi: 10.1016/j.csbj.2019.09.002. PMID: 31921389; PMCID: PMC6944736. (2018IF: 4.720)

· Liu D, Li G, Zuo Y*. Function determinants of TET proteins: the arrangements of sequence motifs with specific codes. Brief Bioinform. 2019 Sep 27;20(5):1826-1835. doi: 10.1093/bib/bby053. PMID: 29947743. (2019 IF: 13.994)

· Long, C., Li, W., Liang, P., Liu, S., & Zuo, Y. (2019). Transcriptome Comparisons of Multi-Species Identify Differential Genome Activation of Mammals Embryogenesis. IEEE Access, 7, 7794-7802. (2018 IF: 4.098) ESI 1%高被引论文

· Zuo Y*, Chang Y, Huang S, Zheng L, Yang L, Cao G. iDEF-PseRAAC: Identifying the Defensin Peptide by Using Reduced Amino Acid Composition Descriptor. Evol Bioinform Online. 2019 Jul 31;15:1176934319867088. doi: 10.1177/1176934319867088. PMID: 31391777; PMCID: PMC6669840. (2018 IF: 2.203)

· Hu B, Zheng L, Long C, Song M, Li T, Yang L, Zuo Y*. EmExplorer: a database for exploring time activation of gene expression in mammalian embryos. Open Biol. 2019 Jun 28;9(6):190054. doi: 10.1098/rsob.190054. Epub 2019 Jun 5. PMID: 31164042; PMCID: PMC6597754. (2018IF: 3.890)

· Zheng L, Huang S, Mu N, Zhang H, Zhang J, Chang Y, Yang L, Zuo Y*. RAACBook: a web server of reduced amino acid alphabet for sequence-dependent inference by using Chou's five-step rule. Database (Oxford). 2019 Jan 1;2019:baz131. doi: 10.1093/database/baz131. PMID: 31802128; PMCID: PMC6893003. (2019 IF: 2.593)

Before

· Guangqi Gao, Meng Xu, Chunling Bai, Yulan Yang, Guangpeng Li, Junyang Xu, Zhuying Wei, Jiumeng Min, Guanghua Su, Xianqiang Zhou, Jun Guo, Yu Hao, Guiping Zhang, Xukui Yang, Xiaomin Xu, Randall B Widelitz, Cheng-Ming Chuong Chi Zhang, Jun Yin*, Yongchun Zuo*, Comparative genomics and transcriptomics of Chrysolophus provide insights into the evolution of complex plumage colouration. GigaScience, 2018, 7(10) 1-14. (2017 IF: 7.267).

· Rongsong Luo, Chunling Bai, Lei Yang, Zhong Zheng, Guanghua Su, Guangqi Gao, Zhuying Wei, Yongchun Zuo*, Guangpeng Li*, DNA methylation subpatterns at distinct regulatory regions in human early embryos, Open Biol. 2018, 8: 180131. (2017 IF: 3.286).

· Wang SY, Huo HY, Su DQ, Lu QZ, Chen XW, Yang L, Zuo YC*, Lv YL, Characterize the difference between TMPRSS2-ERG and non-TMPRSS2-ERG fusion patients by clinical and biological characteristics in prostate cancer, Gene, 2018 679:186-194. (2017 IF: 2.498).

· Lei Yang, Shiyuan Wang, Qi Zhang, Yi Pan, Yingli Lv, Xiaowen Chen, Yongchun Zuo* and Dapeng Hao, Clinical significance of immune microenvironment in ovarian cancer patients. Mol. Omics, 2018, 14, 341-351. (2016 IF: 2.781).

· Luqiang Zhang, Qianzhong Li*, Wen Jin, Yongchun Zuo, Shuchun Guo. Genome-wide analysis of H3K36me3 and its regulations to cancer-related genes expression in human cell lines. Biosystems 2018, 171(2018) 59-65, (2017 IF: 1.619).

· Mengye Lu, Shuai Liu, Arun Kumarsangaiah, Yunpeng Zhou, Zheng Pan, Yongchun Zuo, Nucleosome Positioning with Fractal Entropy Increment of Diversity in Telemedicine. IEEE Access, 2018, 6：33451-33459. (2017 IF: 3.557).

· Zuo YC*, Su GH, Cheng L, Liu K, Feng Y, Wei ZY, Bai CL, Cao GF, Li GP*, Coexpression analysis identifies nuclear reprogramming barriers of somatic cell nuclear transfer embryos, Oncotarget, 2017, 8(39) 65847-65859 (2016 IF: 5.168).

· Huo HY, Li T, Wang SY, Lv YL, Zuo YC*, Yang L*, Prediction of presynaptic and postsynaptic neurotoxins by using Pseudo amino acid composition and motif features, Scientific Reports, 7: 5827 (2016 IF: 4.259).

· Yang L, Wang SY, Zhou M, Chen XW, Jiang W, Zuo YC*, lv YL, Molecular classification of prostate adenocarcinoma by the integrated somatic mutation profiles and molecular network. Scientific Reports, 2017, 7(1):738. (2016 IF: 4.259).

· Guo SC# , Zuo YC#, Zhang YF, Wu CY, Su WX, Jin W, Yu HF, An YL, Li QZ*. Large-scale transcriptome comparison of sunflower genes responsive to Verticillium dahliae. BMC Genomics. 2017. 18(1):42 (2015 IF: 3.867).

· Zuo YC*, Li Y, Chen YL, Li GP, Yan ZH, Yang L*. PseKRAAC: A flexible web server for generating pseudo K-tuple reduced amino acids composition. ,Bioinformatics. 2017, 33(1):122-124 (2016 IF:7.307).ESI 1%高被引.

· Che D, Wang Y, Bai W, Li L, Liu G, Zhang L, Zuo YC, Tao S, Hua J, Liao M*. Dynamic and modular gene regulatory networks drive the development of gametogenesis. Brief Bioinform. 2017 18(4):712-721. (2015 IF: 5.134).

· Zuo YC*, Su GH, Wang SS, Yang L, Liao MZ, Wei ZY, Bai CL, Li GP*. Exploring timing activation of functional pathway based on differential co-expression analysis in preimplantation embryogenesis, Oncotarget, 2016 7(45): 74120-74131. (2014 IF: 6.359).

· Yang L, Wang SY, Zhou M, Chen XW, Zuo YC*, Lv YL. Characterize the relationship between essential and TATA-containing genes for S. cerevisiae by network topologies in the perturbation sensitivity network. Genomics, 2016 108(3-4) 177-183. (2015 IF: 2.386).

· Yang L, Wang SY, Zhou M, Chen XW, Zuo YC, Lv YL. Characterization of BioPlex network by topological properties. J Theor Biol. 2016 409:148-154. (2015 IF: 2.049).

· Su WX, Li QZ*, Zhang LQ, Fan GL, Wu CY, Yan ZH, Zuo YC. Gene expression classification using epigenetic features and DNA sequence composition in the human embryonic stem cell line H1. Gene. 2016, 592(1):227–234 (2015 IF: 2.319).

· Zhang L, Xuan H, Zuo YC, Xu G, Wang P, Song Y, Zhang SH*. Topological characteristics of target genes regulated by abiotic-stress-responsible miRNAs in a rice interactome network. Funct Integr Genomics. 2016 16(3):243-51. (2015 IF: 2.265 ).

· Jia X, Sun C, Zuo YC, Li G, Li G, Ren L, Chen G. Integrating transcriptomics and metabolomics to characterise the response of Astragalus membranaceus Bge. var. mongolicus (Bge.) to progressive drought stress. BMC Genomics. 2016 17:188. (2014 IF: 3.986).

· Yang L, Wang S, Zhou M, Chen X, Zuo YC, Sun D, Lv Y.Comparative analysis of housekeepingand tissue-selective genes in Human based on network topologies andbiological properties. Molecular Genetics and Genomics, 2016 291(3):1227-41 (2014 IF: 2.728).

· Su WX, Li QZ*, Zuo YC, Zhang LQ. Association analysis between the distributions of histone modifications and gene expression in the human embryonic stem cell. Gene, 2016 575(1):90-100. (2014 IF: 2.019).

· Zuo YC*, Lv Y, Wei Z, Yang L, Li G, Fan G. iDPF-PseRAAAC : A web-server for identifying the defensin peptide family and subfamily using pseudo reduced amino acid alphabet composition. PLOS ONE, 2015 Dec 29;10(12):e0145541. (2014 IF: 3.234).

· Tai, DP, Liu, PX, Gao, J, Jin, MZ, Xu, T, Zuo, YC, Liang, H, Liu, DJ*. Generation of Arbas Cashmere Goat Induced Pluripotent Stem Cells Through Fibroblast Reprogramming. Cellular Reprogramming, 2015 17(4): 297-305. (2014 IF: 1.788).

· Yang L, Hao D, Wang J, Xing X, Lv Y, Zuo YC*, Jiang W*. Characterization of proteins in S. cerevisiae with subcellular localizations Molecular BioSystems, 2015, 11(5), 1360-9. (2014 IF: 3.210).

· Zuo YC*, Su WX, Zhang SH, Wang SS, Wu CY, Yang L*, Li GP*. Discrimination of membrane transporter protein types using K-nearest neighbor method derived from similarity distance of total diversity measure. Molecular BioSystems,2015 11(3):950-7. (2014 IF: 3.210).

· Yang L, Hao D, Lv Y, Zuo YC*, Jiang W. Genome-wide characterization of essential, toxicity-modulating and nophenotype genes in S. cerevisiae, GENE, 2015 559(1):1-8. (2014 IF: 2.019).

· Zuo YC, Gao Y, Su G, Bai C, Wei Z, Liu K, Li Q, Bou S1, Li GP.* Irregular transcriptome reprogramming probably causes thec developmental failure of embryos produced by interspecies somatic cell nuclear transfer between the Przewalski's gazelle and the bovine. BMC Genomics, 2014, 15:1113. (2013 IF: 4.041).

· Yang L, Wang J, Lv Y, Hao D, Zuo YC, Li X, Jiang W. Characterization of TATA-containing genes and TATA-less genes in S. cerevisiae by network topologies and biological properties. Genomics. 2014 104(6B):562-71. (2013 IF: 2.793).

· Yang L, Wang J, Wang H, Lv Y, Zuo YC, Li X, Jiang W. Analysis and identification of essential genes in humans using topological properties and biological information Gene. 2014, 349:82-91. (2013 IF: 2.082).

· Fan GL*, Liu YL, Zuo YC*, Mei HX, Rang Y, Hou BY, Zhao Y. acACS: Improving the Prediction Accuracy of Protein Subcellular Locations and Protein Classification by Incorporating the Average Chemical Shifts Composition. The Scientific World Journal. 2014:864135, 1-9. (2013 IF: 1.73).

· Zuo YC*, Peng Y, Liu L, Chen W, Yang L, Fan GL. Predicting peroxidase subcellular location by hybridizing different descriptors of Chou' pseudo amino acid patterns. Anal Biochem. 2014 458:14-9. (2013 IF: 2.305).

· Yang L, Lv Y, Li T, Zuo YC*, Jiang W. Human proteins characterization with subcellular localizations. J Theor Biol. 2014 358C:61-73. (2013 IF: 2.303).

· Yang L, Wang J, Wang H, Lv Y, Zuo YC*, Jiang W*. Characterization of essential genes by topological properties in the perturbation sensitivity network. Biochem Biophys Res Commun. 2014 448(4):473-9. (2008 IF: 2.281).

· Zuo YC*, Zhang P, Liu L, Li T, Peng Y, Li G, Li QZ. Sequence-specific flexibility organization of splicing flanking sequence and prediction of splice sites in the human genome. Chromosome Research ,2014 22(3):321-34. (2013 IF: 2.688).

· Huang X, Han X, Uyunbilig B, Zhang M, Duo S, Zuo YC, Zhao Y, Yun T, Tai D, Wang C, Li J, Li XL*, Li RF*. Establishment of Bovine Trophoblast Stem-Like Cells from In Vitro-Produced Blastocyst-Stage Embryos Using Two Inhibitors. Stem Cells Dev. 2014 23(13):1501-14. (2013 IF: 4.202).

· Feng P, Lin H, Chen W, Zuo YC, Predicting the types of J-proteins using clustered amino acids. BioMed Research International,2014, 935719. (2014 IF: 1.579).

· Yang L, Wang J, Wang H, Lv Y, Zuo YC*, Jiang W*. Analysis and identification of toxin targets by topological properties in protein–protein interaction network, Journal of Theoretical Biologys, 2014 349(2014)82–91. (2013 IF: 2.303).

· Liu L, Li QZ*, Lin H, Zuo YC. The effect of regions flanking target site on siRNA potency. Genomics 2013 102(4) 215-222. (2012 IF: 3.010).

· Fan GL, Li QZ*, Zuo YC. Predicting acidic and alkaline enzymes by incorporating the average chemical shift and gene ontology informations into the general form of Chou's PseAAC. Process Biochemistry 48 (2013) 1048–1053. (2012 IF: 2.414).

· Li T, Li QZ*, Liu S, Fan GL, Zuo YC, Peng Y. PreDNA: accurate prediction of DNA-binding sites in proteins by integrating sequence and geometric structure information, Bioinformatics, 2013, 29(6):678-85. (2012 IF: 5.323).

· Zuo YC*, Chen W, Fan GL, Li QZ. A similarity distance of diversity measure for discriminating mesophilic and thermophilic proteins. Amino Acids. 2013，44(2):573-80. (2012 IF: 3.914).

· Zuo YC*, Li QZ. The DNA geometric flexibility of promoter in model organism genomes, Procedia 2012 (2011)2732–2737. (EI, ISTP).

· Zuo YC, Li QZ*. Identification of TATA and TATA-less promoters in plant genomes by integrating diversity measure, GC-Skew and DNA geometric flexibility. 2011 Genomics. 97(3): 112-120. (2010 IF: 3.327).

· Zuo YC, Li QZ*. The hidden physical codes for modulating the prokaryotic transcription initiation. 2010 Physica A 2010 389(19) 4217–4223. (2009 IF: 1.562).

· Zuo YC, Li QZ*. Using K-minimum increment of diversity to predict secretory proteins of malaria parasite based on groupings of amino acids. 2010, Amino Acids. 2010(3) 38:859–867. (2008 IF: 4.132).

· Zuo YC, Li QZ*. Analysis of plant TATA and TATA-less promoters by using sequence and structure features. 2009，Progress in Biochemistry and Biophysics. 36(7): 863-871. (2008 IF: 0.211).